Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tsc1Hamartin. (1134 aa)    
Predicted Functional Partners:
Rheb
GTP-binding protein Rheb.
   
 0.992
Tsc1-2
Hamartin.
     
  0.988
akt2-a
RAC-beta serine/threonine-protein kinase A; Belongs to the protein kinase superfamily.
    
 0.980
STIP1
Stress-induced-phosphoprotein 1.
  
 0.977
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.969
HSPA8
Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.
  
 0.966
Hsp60
60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.
   
 0.961
Syncrip
Heterogeneous nuclear ribonucleoprotein Q.
    
  0.957
PPP5C
Serine/threonine-protein phosphatase 5.
    
 0.946
Tonsl
Tonsoku-like protein.
    
 0.937
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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