Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HINFPHistone H4 transcription factor. (494 aa)    
Predicted Functional Partners:
Gsc
Homeobox protein goosecoid.
    
   0.869
rig-4
Protein sidekick-like protein.
      
 0.601
ceh-9
Homeobox protein ceh-9.
    
   0.539
Hmx1
Homeobox protein HMX1.
    
   0.539
dctn2
Dynactin subunit 2.
      
 0.501
Ptprq
Phosphatidylinositol phosphatase PTPRQ.
      
 0.477
Psmb7
Proteasome subunit beta.
      
 0.471
ZNF784
Zinc finger protein.
  
 
   0.469
letm1
LETM1 and EF-hand domain-containing protein 1, mitochondrial.
      
 0.469
ZSCAN5B
Zinc finger and SCAN domain-containing protein 5B.
  
 
   0.464
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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