Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
SLC35F1Solute carrier family 35 member F1. (435 aa)    
Predicted Functional Partners:
Fntb
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
  0.826
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
  0.826
rig-4
Protein sidekick-like protein.
      
 0.724
Bicc1
Protein bicaudal C-like protein 1.
      
 0.722
T06_603
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.676
Pdss2
Decaprenyl-diphosphate synthase subunit 2.
   
  0.623
Fbxo30
F-box only protein 30.
   
  0.623
PDSS1
Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.
   
  0.623
Fbxo30-2
F-box only protein 30.
   
  0.623
T06_16480
Uncharacterized protein.
      
 0.601
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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