ABCF1 protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABCF1

ATP-binding cassette sub-family F member 1. (606 aa)

Predicted Functional Partners:

T06_10875

0.933

Abcb7

0.897

Abce1

0.833

RPS18

0.803

Polr1b

0.775

DRG1

0.774

Eif2s1

0.763

GCN1L1

0.761

HSPA8

0.761

Eif2s2

0.728

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCF1	Abcb7	A0A0V0WWC2	A0A0V0WD98	ATP-binding cassette sub-family F member 1.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.897
ABCF1	Abce1	A0A0V0WWC2	A0A0V0W3T0	ATP-binding cassette sub-family F member 1.	ATP-binding cassette sub-family E member 1.	0.833
ABCF1	DRG1	A0A0V0WWC2	A0A0V0W2Q0	ATP-binding cassette sub-family F member 1.	Developmentally-regulated GTP-binding protein 1.	0.774
ABCF1	Eif2s1	A0A0V0WWC2	A0A0V0X0F1	ATP-binding cassette sub-family F member 1.	Eukaryotic translation initiation factor 2 subunit 1.	0.763
ABCF1	Eif2s2	A0A0V0WWC2	A0A0V0XAD8	ATP-binding cassette sub-family F member 1.	Eukaryotic translation initiation factor 2 subunit 2.	0.728
ABCF1	GCN1L1	A0A0V0WWC2	A0A0V0WI15	ATP-binding cassette sub-family F member 1.	Translational activator GCN1.	0.761
ABCF1	HSPA8	A0A0V0WWC2	A0A0V0X4P8	ATP-binding cassette sub-family F member 1.	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.	0.761
ABCF1	Polr1b	A0A0V0WWC2	A0A0V0WDX3	ATP-binding cassette sub-family F member 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.775
ABCF1	RPS18	A0A0V0WWC2	A0A0V0WWA7	ATP-binding cassette sub-family F member 1.	40S ribosomal protein S18.	0.803
ABCF1	T06_10875	A0A0V0WWC2	A0A0V0WX72	ATP-binding cassette sub-family F member 1.	Elongation factor 1-gamma.	0.933
Abcb7	ABCF1	A0A0V0WD98	A0A0V0WWC2	ATP-binding cassette sub-family B member 7, mitochondrial.	ATP-binding cassette sub-family F member 1.	0.897
Abcb7	Abce1	A0A0V0WD98	A0A0V0W3T0	ATP-binding cassette sub-family B member 7, mitochondrial.	ATP-binding cassette sub-family E member 1.	0.689
Abce1	ABCF1	A0A0V0W3T0	A0A0V0WWC2	ATP-binding cassette sub-family E member 1.	ATP-binding cassette sub-family F member 1.	0.833
Abce1	Abcb7	A0A0V0W3T0	A0A0V0WD98	ATP-binding cassette sub-family E member 1.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.689
Abce1	DRG1	A0A0V0W3T0	A0A0V0W2Q0	ATP-binding cassette sub-family E member 1.	Developmentally-regulated GTP-binding protein 1.	0.449
Abce1	Eif2s1	A0A0V0W3T0	A0A0V0X0F1	ATP-binding cassette sub-family E member 1.	Eukaryotic translation initiation factor 2 subunit 1.	0.956
Abce1	Eif2s2	A0A0V0W3T0	A0A0V0XAD8	ATP-binding cassette sub-family E member 1.	Eukaryotic translation initiation factor 2 subunit 2.	0.897
Abce1	Polr1b	A0A0V0W3T0	A0A0V0WDX3	ATP-binding cassette sub-family E member 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
Abce1	RPS18	A0A0V0W3T0	A0A0V0WWA7	ATP-binding cassette sub-family E member 1.	40S ribosomal protein S18.	0.975
DRG1	ABCF1	A0A0V0W2Q0	A0A0V0WWC2	Developmentally-regulated GTP-binding protein 1.	ATP-binding cassette sub-family F member 1.	0.774