Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T06_16027Coiled-coil domain-containing protein. (1080 aa)    
Predicted Functional Partners:
unc-10
Rab-3-interacting molecule unc-10.
    
 
 0.728
Ppp1r9b
Neurabin-2.
    
 
 0.723
Kdm8
Lysine-specific demethylase 8.
    
 
 0.549
Rgs12
Regulator of G-protein signaling 12.
    
   0.537
hsp-3
Heat shock 70 kDa protein C.
    
   0.535
LRPAP1
Alpha-2-macroglobulin receptor-associated protein.
      
 0.500
Ten-m
Teneurin-m.
    
 
 0.492
Plbd2
Phospholipase B-like; Putative phospholipase.
      
 0.476
plxdc2
Plexin domain-containing protein 2.
      
 0.472
Gtf3c1
General transcription factor 3C polypeptide 1.
      
 0.471
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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