Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pept-3Peptide transporter 3. (718 aa)    
Predicted Functional Partners:
nac-3
Sodium-dependent high-affinity dicarboxylate transporter 3.
   
  
 0.733
Ddx52
Putative ATP-dependent RNA helicase DDX52.
      
 0.728
Slc5a8
Sodium-coupled monocarboxylate transporter 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.717
svkA
Serine/threonine-protein kinase svkA.
      
 0.709
POLA1
DNA polymerase alpha catalytic subunit.
      
 0.707
bms1
Ribosome biogenesis protein bms1.
      
 0.703
Ace-2
Angiotensin-converting enzyme.
   
  
 0.703
Sult1c2
Sulfotransferase 1C2.
      
 0.686
slc37a3
Sugar phosphate exchanger 3.
    
 
 0.628
TAF9
Transcription initiation factor TFIID subunit 9.
      
 0.601
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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