Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Uri1Unconventional prefoldin RPB5 interactor. (247 aa)    
Predicted Functional Partners:
PFDN2
Prefoldin subunit 2.
    
 0.998
Pdrg1
P53 and DNA damage-regulated protein 1.
    
 0.997
RUVBL1
DNA helicase; Belongs to the RuvB family.
    
 0.996
RPAP3
RNA polymerase II-associated protein 3.
    
 0.994
rpb-5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.984
rpb-5-2
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.984
ruvbl2
DNA helicase; Belongs to the RuvB family.
    
 0.983
PFDN5
Prefoldin subunit 5.
    
 0.940
PFDN4
Prefoldin subunit 4.
     
 0.933
RpII215
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.930
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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