Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T06_15325Alpha-L-fucosidase. (475 aa)    
Predicted Functional Partners:
Naga
Alpha-galactosidase.
  
 
 0.834
Glb1
Beta-galactosidase.
 
  
 0.600
NAGLU
Alpha-N-acetylglucosaminidase.
   
  
 0.589
Ltv1
Protein LTV1-like protein.
      
 0.587
Hexa
Beta-hexosaminidase.
  
  
 0.570
Ipcef1
Beta-mannosidase.
     
 0.550
Mark3
Non-specific serine/threonine protein kinase.
    
   0.536
Fam20c-2
Extracellular serine/threonine protein kinase FAM20C.
     
  0.533
DEADC1
tRNA-specific adenosine deaminase 2.
      
 0.515
C38H2.2
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.
      
 0.514
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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