STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F14F9.5Endo/exonuclease/phosphatase domain-containing protein. (352 aa)    
Predicted Functional Partners:
Cdc40
Pre-mRNA-processing factor 17.
   
 0.947
Ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.917
Prpf8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.878
EFTUD2
U5 small nuclear ribonucleoprotein component.
    
 
 0.851
Prpf19
Pre-mRNA-processing factor 19.
    
   0.849
CDC5L
Cell division cycle 5-like protein.
    
   0.849
T06_12874
Peptidyl-prolyl cis-trans isomerase E.
    
  0.846
PLRG1
Pleiotropic regulator 1.
   
   0.839
T06_4504
Protein BUD31-like protein.
    
 
 0.830
SNW1
SNW domain-containing protein 1.
   
   0.828
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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