STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T08_16140Dilute domain-containing protein. (60 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.751
TJP1
Tight junction protein ZO-1; Belongs to the MAGUK family.
    
 0.677
Rac1
Ras-related C3 botulinum toxin substrate 1.
    
 0.674
Rhou
Rho-related GTP-binding protein RhoU.
    
 0.674
Rac1-2
Ras-related C3 botulinum toxin substrate 1.
    
 0.674
rho-1
Ras-like GTP-binding protein rhoA.
    
 0.670
F52C9.5-4
Uncharacterized protein.
    
 0.670
syd-1
Rho GTPase-activating protein syd-1.
    
 0.652
arx-2
Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.
    
 0.649
arx-1
Actin-related protein 3; Belongs to the actin family.
    
 0.643
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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