T08_16745 protein (Trichinella sp. T8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T08_16745

Uncharacterized protein. (288 aa)

Predicted Functional Partners:

unc-89-2

0.707

unc-89-3

0.707

lrk-1

0.687

TONSL

0.631

unc-10

0.533

KDM6A

0.497

T08_1062

0.490

mel-26

0.490

rdx

0.490

Mrps11

0.477

Your Current Organism:

Trichinella sp. T8

NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KDM6A	Mrps11	A0A0V1NHJ3	A0A0V1NIT8	Lysine-specific demethylase 6A.	28S ribosomal protein S11, mitochondrial.	0.726
KDM6A	T08_16745	A0A0V1NHJ3	A0A0V1NET3	Lysine-specific demethylase 6A.	Uncharacterized protein.	0.497
KDM6A	TONSL	A0A0V1NHJ3	A0A0V1P063	Lysine-specific demethylase 6A.	Tonsoku-like protein.	0.923
KDM6A	lrk-1	A0A0V1NHJ3	A0A0V1NR07	Lysine-specific demethylase 6A.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.993
KDM6A	unc-10	A0A0V1NHJ3	A0A0V1PFB4	Lysine-specific demethylase 6A.	Rab-3-interacting molecule unc-10.	0.672
KDM6A	unc-89-2	A0A0V1NHJ3	A0A0V1PHM0	Lysine-specific demethylase 6A.	Muscle M-line assembly protein unc-89.	0.953
KDM6A	unc-89-3	A0A0V1NHJ3	A0A0V1PHM2	Lysine-specific demethylase 6A.	Muscle M-line assembly protein unc-89.	0.953
Mrps11	KDM6A	A0A0V1NIT8	A0A0V1NHJ3	28S ribosomal protein S11, mitochondrial.	Lysine-specific demethylase 6A.	0.726
Mrps11	T08_16745	A0A0V1NIT8	A0A0V1NET3	28S ribosomal protein S11, mitochondrial.	Uncharacterized protein.	0.477
Mrps11	lrk-1	A0A0V1NIT8	A0A0V1NR07	28S ribosomal protein S11, mitochondrial.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.441
T08_1062	T08_16745	A0A0V1NR24	A0A0V1NET3	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.490
T08_16745	KDM6A	A0A0V1NET3	A0A0V1NHJ3	Uncharacterized protein.	Lysine-specific demethylase 6A.	0.497
T08_16745	Mrps11	A0A0V1NET3	A0A0V1NIT8	Uncharacterized protein.	28S ribosomal protein S11, mitochondrial.	0.477
T08_16745	T08_1062	A0A0V1NET3	A0A0V1NR24	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.490
T08_16745	TONSL	A0A0V1NET3	A0A0V1P063	Uncharacterized protein.	Tonsoku-like protein.	0.631
T08_16745	lrk-1	A0A0V1NET3	A0A0V1NR07	Uncharacterized protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.687
T08_16745	mel-26	A0A0V1NET3	A0A0V1P355	Uncharacterized protein.	Protein maternal effect lethal 26.	0.490
T08_16745	rdx	A0A0V1NET3	A0A0V1PG51	Uncharacterized protein.	Protein roadkill.	0.490
T08_16745	unc-10	A0A0V1NET3	A0A0V1PFB4	Uncharacterized protein.	Rab-3-interacting molecule unc-10.	0.533
T08_16745	unc-89-2	A0A0V1NET3	A0A0V1PHM0	Uncharacterized protein.	Muscle M-line assembly protein unc-89.	0.707