STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mybbp1aMyb-binding protein 1A-like protein. (1086 aa)    
Predicted Functional Partners:
HEATR1
HEAT repeat-containing protein 1.
   
 
 0.985
CIRH1A
Cirhin.
   
 
 0.962
Smarca1
Putative global transcription activator SNF2L1.
   
 0.956
T08_8561
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
   
 0.950
sf3b1
Splicing factor 3B subunit 1.
   
 0.948
dbe
KRR1 small subunit processome component-like protein.
   
   0.947
wdr75
WD repeat-containing protein 75.
   
 
 0.942
Wdr43
WD repeat-containing protein 43.
   
 
 0.941
Polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.938
T08_11377
Pumilio domain-containing protein-like protein.
   
   0.934
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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