STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ifa-1Intermediate filament protein ifa-1; Belongs to the intermediate filament family. (645 aa)    
Predicted Functional Partners:
T08_12608
LEM domain-containing protein.
    
 0.826
baf-1
Barrier-to-autointegration factor 1.
   
 0.820
baf-1-2
Barrier-to-autointegration factor 1.
   
 0.820
T08_3240
LEM domain-containing protein.
    
 0.819
Act5C
Actin-5C.
    
 0.817
Act5C-2
Actin-5C.
    
 0.788
unc-15
Paramyosin.
     
 0.782
unc-54
Myosin-4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.782
unc-54-2
Myosin-3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.776
Rbm39
RNA-binding protein 39.
    
 0.764
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.