STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ShawPotassium voltage-gated channel protein Shaw; Belongs to the potassium channel family. (463 aa)    
Predicted Functional Partners:
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.978
rpl-26
60S ribosomal protein L26.
  
 0.911
RPL31
60S ribosomal protein L31.
   
 0.907
RPL29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.904
Rpl30
60S ribosomal protein L30.
  
 0.904
rpl-25.1
60S ribosomal protein L23a 1; Belongs to the universal ribosomal protein uL23 family.
  
 0.904
RpL32
60S ribosomal protein L32.
  
 0.902
rpl-41
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.
  
 0.898
T08_2509
60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.895
rpl-17
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.894
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.