STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-155-4Putative cuticle collagen. (506 aa)    
Predicted Functional Partners:
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.878
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.878
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.790
trio
Triple functional domain protein.
    
 0.681
T08_7920
Uncharacterized protein.
    
 0.599
pro-1
Pre-rRNA-processing protein pro-1.
    
 0.551
sqt-1-5
Cuticle collagen sqt-1.
  
     0.541
ftt-2
14-3-3-like protein 2; Belongs to the 14-3-3 family.
    
 0.494
EGF1-2
Fibropellin-1.
    
 0.490
ned-8
Nedd8.
    
 0.480
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.