Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
T08_282Uncharacterized protein. (273 aa)    
Predicted Functional Partners:
alh-13
Putative delta-1-pyrroline-5-carboxylate synthase.
    
 0.962
Gart
Trifunctional purine biosynthetic protein adenosine-3.
  
 
 0.914
F09E5.3
Putative deoxyribose-phosphate aldolase.
  
 0.893
hsdl2
Hydroxysteroid dehydrogenase-like protein 2.
  
 0.891
ABAT
4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.852
AcCoAS
Acetyl-coenzyme A synthetase.
  
 0.830
tpi-1
Triosephosphate isomerase.
  
 0.813
T08_4194
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 0.811
Fh
Fumarate hydratase, mitochondrial.
  
 0.808
Hsp60
60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.
  
 0.803
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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