STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD8Beta,beta-carotene 9',10'-oxygenase. (600 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.690
scra
Actin-binding protein anillin.
   
 
 0.673
ALDH3B1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.645
HSD17B6
17-beta-hydroxysteroid dehydrogenase type 6; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.629
T08_5191
Putative oxidoreductase-like protein.
     
 0.616
rho-1
Ras-like GTP-binding protein rhoA.
     
 0.599
PNPLA4
Patatin-like phospholipase domain-containing protein 4.
     
 0.586
ARHGAP1
Rho GTPase-activating protein 1.
     
 0.582
TJP1
Tight junction protein ZO-1; Belongs to the MAGUK family.
     
 0.581
Abi2
Abl interactor 2.
   
 
  0.580
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.