STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nft-1Rho GTPase-activating protein 39. (2061 aa)    
Predicted Functional Partners:
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.933
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.933
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.808
pro-1
Pre-rRNA-processing protein pro-1.
   
 0.808
oxt
Xylosyltransferase oxt.
    
 0.785
PTK7
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.777
tex10
Testis-expressed sequence 10-like protein.
    
 0.776
Rps14
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.772
Pes1
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.760
bop1-b
Ribosome biogenesis protein bop1-B.
   
 0.727
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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