STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc8a3Sodium/calcium exchanger 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (904 aa)    
Predicted Functional Partners:
SLC8A1
Sodium/calcium exchanger 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
  
  
 
0.917
CSPG4
Chondroitin sulfate proteoglycan 4.
   
 0.720
pat-2
Integrin alpha pat-2; Belongs to the integrin alpha chain family.
   
 
 0.689
egl-4
cGMP-dependent protein kinase egl-4.
   
 
 0.683
leo1
RNA polymerase-associated protein LEO1.
   
  
 0.596
EDEM2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
     
 0.524
FURIN
Furin; Belongs to the peptidase S8 family.
    
 0.497
bli-4
Endoprotease bli-4; Belongs to the peptidase S8 family.
    
 0.497
ANK1
Ankyrin-1; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.421
trp-1
Transient-receptor-potential-like protein; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.419
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.