STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC4A4-2Anion exchange protein. (1028 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.734
comt
Vesicle-fusing ATPase 1.
    
  0.650
cdc-48.2
Transitional endoplasmic reticulum ATPase-like protein 2; Belongs to the AAA ATPase family.
    
  0.616
SPATA5
Spermatogenesis-associated protein 5.
    
  0.616
rho-1
Ras-like GTP-binding protein rhoA.
    
  0.580
NVL
Nuclear valosin-containing protein-like.
    
  0.579
Fignl1
Fidgetin-like protein 1.
    
  0.579
mec-2
Mechanosensory protein 2.
    
 0.573
sto-2
Stomatin-2.
    
 0.573
unc-1
Protein unc-1.
    
 0.573
Your Current Organism:
Trichinella sp. T8
NCBI taxonomy Id: 92180
Other names: T. sp. T8, Trichinella T8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.