AS27_11483 protein (Aptenodytes forsteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AS27_11483

Diphthamide biosynthesis protein 7. (405 aa)

Predicted Functional Partners:

AS27_08563

0.834

AS27_06487

0.670

AS27_08404

0.660

AS27_00144

0.660

AS27_00449

0.547

AS27_04000

0.547

AS27_00912

0.547

AS27_14483

0.482

AS27_05219

0.469

Your Current Organism:

Aptenodytes forsteri

NCBI taxonomy Id: 9233
Other names: A. forsteri, emperor penguin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS27_00144	AS27_00449	A0A087QWS2	A0A087QME3	Elongation factor Tu GTP-binding domain-containing protein 1.	Diphthine--ammonia ligase.	0.725
AS27_00144	AS27_00912	A0A087QWS2	A0A087RHI2	Elongation factor Tu GTP-binding domain-containing protein 1.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	0.878
AS27_00144	AS27_04000	A0A087QWS2	A0A087R9L5	Elongation factor Tu GTP-binding domain-containing protein 1.	Diphthine synthase.	0.764
AS27_00144	AS27_05219	A0A087QWS2	A0A087QUR5	Elongation factor Tu GTP-binding domain-containing protein 1.	Ribonuclease UK114.	0.642
AS27_00144	AS27_11483	A0A087QWS2	A0A087RAF2	Elongation factor Tu GTP-binding domain-containing protein 1.	Diphthamide biosynthesis protein 7.	0.660
AS27_00449	AS27_00144	A0A087QME3	A0A087QWS2	Diphthine--ammonia ligase.	Elongation factor Tu GTP-binding domain-containing protein 1.	0.725
AS27_00449	AS27_00912	A0A087QME3	A0A087RHI2	Diphthine--ammonia ligase.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	0.547
AS27_00449	AS27_04000	A0A087QME3	A0A087R9L5	Diphthine--ammonia ligase.	Diphthine synthase.	0.898
AS27_00449	AS27_05219	A0A087QME3	A0A087QUR5	Diphthine--ammonia ligase.	Ribonuclease UK114.	0.469
AS27_00449	AS27_06487	A0A087QME3	A0A087RIK5	Diphthine--ammonia ligase.	116 kDa U5 small nuclear ribonucleoprotein component.	0.725
AS27_00449	AS27_08404	A0A087QME3	A0A087QII7	Diphthine--ammonia ligase.	Tr-type G domain-containing protein.	0.725
AS27_00449	AS27_08563	A0A087QME3	A0A087R5P0	Diphthine--ammonia ligase.	Elongation factor 2.	0.963
AS27_00449	AS27_11483	A0A087QME3	A0A087RAF2	Diphthine--ammonia ligase.	Diphthamide biosynthesis protein 7.	0.547
AS27_00912	AS27_00144	A0A087RHI2	A0A087QWS2	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Elongation factor Tu GTP-binding domain-containing protein 1.	0.878
AS27_00912	AS27_00449	A0A087RHI2	A0A087QME3	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Diphthine--ammonia ligase.	0.547
AS27_00912	AS27_04000	A0A087RHI2	A0A087R9L5	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Diphthine synthase.	0.912
AS27_00912	AS27_05219	A0A087RHI2	A0A087QUR5	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Ribonuclease UK114.	0.469
AS27_00912	AS27_06487	A0A087RHI2	A0A087RIK5	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	116 kDa U5 small nuclear ribonucleoprotein component.	0.878
AS27_00912	AS27_08404	A0A087RHI2	A0A087QII7	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Tr-type G domain-containing protein.	0.878
AS27_00912	AS27_08563	A0A087RHI2	A0A087R5P0	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.	Elongation factor 2.	0.934