STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AS28_04945E3 ubiquitin-protein ligase LNX. (655 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
  0.639
UBB
Polyubiquitin.
   
  0.577
AS28_05212
Protein numb.
   
 
 0.575
CASK
Peripheral plasma membrane protein CASK.
   
 0.544
PICK1
PRKCA-binding protein.
    
 0.498
AS28_14393
Pre-mRNA cleavage complex 2 protein Pcf11.
      
 0.489
MMS19
MMS19 nucleotide excision repair protein.
      
 0.483
IFT57
Intraflagellar transport protein 57.
    
 0.480
IFT80
Intraflagellar transport protein 80.
    
 0.476
MPP3
MAGUK p55 subfamily member 3.
    
 0.449
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.