AS28_04121 protein (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AS28_04121

Transcription elongation factor A N-terminal and central domain-containing protein 2. (175 aa)

Predicted Functional Partners:

POLR2E

0.852

POLR2H

0.851

AS28_03911

0.851

AS28_06853

0.850

AS28_11535

0.844

POLR2D

0.840

TWISTNB

0.838

AS28_10167

0.835

LEO1

0.828

SUPT4H1

0.826

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS28_03911	AS28_04121	A0A093P2C3	A0A093NH73	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	Transcription elongation factor A N-terminal and central domain-containing protein 2.	0.851
AS28_03911	AS28_06853	A0A093P2C3	A0A093NUK0	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerase II subunit RPB11-a.	0.996
AS28_03911	AS28_10167	A0A093P2C3	A0A093NCW9	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.993
AS28_03911	AS28_11535	A0A093P2C3	A0A093P348	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.997
AS28_03911	LEO1	A0A093P2C3	A0A093RM94	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	RNA polymerase-associated protein LEO1.	0.959
AS28_03911	POLR2D	A0A093P2C3	A0A093QQ90	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerase II subunit RPB4.	0.994
AS28_03911	POLR2E	A0A093P2C3	A0A093PJ40	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.995
AS28_03911	POLR2H	A0A093P2C3	A0A093NQX5	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.995
AS28_03911	SUPT4H1	A0A093P2C3	A0A093NRP6	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	Transcription elongation factor SPT4.	0.979
AS28_03911	TWISTNB	A0A093P2C3	A0A093P8C7	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerase I subunit RPA43.	0.990
AS28_04121	AS28_03911	A0A093NH73	A0A093P2C3	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.851
AS28_04121	AS28_06853	A0A093NH73	A0A093NUK0	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerase II subunit RPB11-a.	0.850
AS28_04121	AS28_10167	A0A093NH73	A0A093NCW9	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.835
AS28_04121	AS28_11535	A0A093NH73	A0A093P348	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.844
AS28_04121	LEO1	A0A093NH73	A0A093RM94	Transcription elongation factor A N-terminal and central domain-containing protein 2.	RNA polymerase-associated protein LEO1.	0.828
AS28_04121	POLR2D	A0A093NH73	A0A093QQ90	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerase II subunit RPB4.	0.840
AS28_04121	POLR2E	A0A093NH73	A0A093PJ40	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.852
AS28_04121	POLR2H	A0A093NH73	A0A093NQX5	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.851
AS28_04121	SUPT4H1	A0A093NH73	A0A093NRP6	Transcription elongation factor A N-terminal and central domain-containing protein 2.	Transcription elongation factor SPT4.	0.826
AS28_04121	TWISTNB	A0A093NH73	A0A093P8C7	Transcription elongation factor A N-terminal and central domain-containing protein 2.	DNA-directed RNA polymerase I subunit RPA43.	0.838