STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM78AProtein FAM78A. (265 aa)    
Predicted Functional Partners:
CASK
Peripheral plasma membrane protein CASK.
   
 0.562
UTP20
Small subunit processome component 20.
   
 0.537
FAM96B
Mitotic spindle-associated MMXD complex subunit MIP18.
      
 0.536
WDR43
WD repeat-containing protein 43.
   
 0.515
AS28_13595
Neurexin-3.
    
 0.500
NRXN3
Neurexin-3.
    
 0.500
AS28_00097
Neurexin-1.
    
 0.500
RPS6
40S ribosomal protein S6.
   
  0.491
EMG1
Ribosomal RNA small subunit methyltransferase NEP1.
   
  0.486
FCF1
rRNA-processing protein FCF1.
   
  0.485
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.