STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA2Putative global transcription activator SNF2L2. (1474 aa)    
Predicted Functional Partners:
AS28_10753
SWI/SNF complex subunit SMARCC1.
   
 0.992
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.991
PBRM1
Protein polybromo-1.
   
0.988
AS28_09344
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
   
 0.987
AS28_05371
Actin-like 6A; Belongs to the actin family.
    
 0.968
SMARCD1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.
   
 0.949
SMARCD3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
   
 0.949
AS28_03852
AT-rich interactive domain-containing protein 1B.
   
 0.945
ARID1A
AT-rich interactive domain-containing protein 1A.
   
 0.945
ARID2
AT-rich interactive domain-containing protein 2.
   
 0.920
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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