NPSR1 protein (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NPSR1

Neuropeptide S receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily. (373 aa)

Predicted Functional Partners:

MRPL13

0.969

RPL6

0.968

RPL19

0.967

RPL5

0.966

AS28_14371

0.966

RPL26L1

0.966

AS28_08550

0.966

RPL32

0.964

RPL4

0.962

RPL8

0.960

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS28_08550	AS28_14371	A0A093RM18	A0A093P325	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
AS28_08550	MRPL13	A0A093RM18	A0A093R346	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.982
AS28_08550	NPSR1	A0A093RM18	A0A093PLG1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Neuropeptide S receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.966
AS28_08550	RPL19	A0A093RM18	A0A093NHH3	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AS28_08550	RPL26L1	A0A093RM18	A0A093QX31	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L26.	0.999
AS28_08550	RPL32	A0A093RM18	A0A093NQV8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L32.	0.999
AS28_08550	RPL4	A0A093RM18	A0A093NZ58	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L4.	0.999
AS28_08550	RPL5	A0A093RM18	A0A093NJP6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L5.	0.999
AS28_08550	RPL6	A0A093RM18	A0A093QV55	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.998
AS28_08550	RPL8	A0A093RM18	A0A093NHG5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L8.	0.999
AS28_14371	AS28_08550	A0A093P325	A0A093RM18	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
AS28_14371	MRPL13	A0A093P325	A0A093R346	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
AS28_14371	NPSR1	A0A093P325	A0A093PLG1	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	Neuropeptide S receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.966
AS28_14371	RPL19	A0A093P325	A0A093NHH3	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AS28_14371	RPL26L1	A0A093P325	A0A093QX31	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L26.	0.999
AS28_14371	RPL32	A0A093P325	A0A093NQV8	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L32.	0.999
AS28_14371	RPL4	A0A093P325	A0A093NZ58	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L4.	0.999
AS28_14371	RPL5	A0A093P325	A0A093NJP6	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L5.	0.999
AS28_14371	RPL6	A0A093P325	A0A093QV55	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
AS28_14371	RPL8	A0A093P325	A0A093NHG5	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L8.	0.999