STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly(U)-binding-splicing factor PUF60. (522 aa)    
Predicted Functional Partners:
FUBP1
Far upstream element-binding protein 1.
   
 
 0.853
SF3A2
Splicing factor 3A subunit 2.
   
 0.804
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 
 0.787
SF3B1
Splicing factor 3B subunit 1.
   
 0.781
SF3B3
Splicing factor 3B subunit 3.
    
 0.780
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.778
U2SURP
U2 snRNP-associated SURP motif-containing protein.
   
 0.776
RBM17
Splicing factor 45.
   
 
0.756
PHF5A
PHD finger-like domain-containing protein 5A.
   
 
 0.753
DHX32
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32.
   
 0.752
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.