N300_06198 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_06198

Ras-related protein Rab-18-B. (198 aa)

Predicted Functional Partners:

N300_00543

0.929

N300_03010

0.865

N300_14723

0.841

N300_04722

0.794

N300_14949

0.794

N300_00676

0.716

N300_01610

0.668

N300_08411

0.660

N300_09906

0.659

N300_02073

0.658

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00543	N300_00676	A0A091HVR2	A0A091HMJ4	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.871
N300_00543	N300_01610	A0A091HVR2	A0A091IDX0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Actin-related protein 10; Belongs to the actin family.	0.415
N300_00543	N300_03010	A0A091HVR2	A0A091HZ41	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab3 GTPase-activating protein catalytic subunit.	0.676
N300_00543	N300_04722	A0A091HVR2	A0A091HWT1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A 1.	0.661
N300_00543	N300_06198	A0A091HVR2	A0A091HMQ8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-18-B.	0.929
N300_00543	N300_08411	A0A091HVR2	A0A091HUI6	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-2A.	0.685
N300_00543	N300_09906	A0A091HVR2	A0A091ID81	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-6A.	0.955
N300_00543	N300_14723	A0A091HVR2	A0A091HH97	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab3 GTPase-activating protein non-catalytic subunit.	0.768
N300_00676	N300_00543	A0A091HMJ4	A0A091HVR2	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.871
N300_00676	N300_04722	A0A091HMJ4	A0A091HWT1	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Rab proteins geranylgeranyltransferase component A 1.	0.960
N300_00676	N300_06198	A0A091HMJ4	A0A091HMQ8	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-18-B.	0.716
N300_00676	N300_08411	A0A091HMJ4	A0A091HUI6	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-2A.	0.739
N300_00676	N300_09906	A0A091HMJ4	A0A091ID81	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-6A.	0.662
N300_01610	N300_00543	A0A091IDX0	A0A091HVR2	Actin-related protein 10; Belongs to the actin family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.415
N300_01610	N300_02073	A0A091IDX0	A0A091I4Y9	Actin-related protein 10; Belongs to the actin family.	Dynactin subunit 6.	0.996
N300_01610	N300_06198	A0A091IDX0	A0A091HMQ8	Actin-related protein 10; Belongs to the actin family.	Ras-related protein Rab-18-B.	0.668
N300_01610	N300_09906	A0A091IDX0	A0A091ID81	Actin-related protein 10; Belongs to the actin family.	Ras-related protein Rab-6A.	0.600
N300_02073	N300_01610	A0A091I4Y9	A0A091IDX0	Dynactin subunit 6.	Actin-related protein 10; Belongs to the actin family.	0.996
N300_02073	N300_06198	A0A091I4Y9	A0A091HMQ8	Dynactin subunit 6.	Ras-related protein Rab-18-B.	0.658
N300_02073	N300_09906	A0A091I4Y9	A0A091ID81	Dynactin subunit 6.	Ras-related protein Rab-6A.	0.583