STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N300_10380Pre-mRNA branch site protein p14. (115 aa)    
Predicted Functional Partners:
N300_13180
PHD finger-like domain-containing protein 5A.
   
 0.998
N300_10538
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.998
N300_11669
Splicing factor 3A subunit 2.
   
 0.991
N300_10917
Splicing factor 3B subunit 4.
    
 0.991
N300_03734
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.985
N300_09472
Small nuclear ribonucleoprotein G.
   
  0.980
N300_02988
Microfibrillar-associated protein 1.
   
   0.980
N300_15673
Pre-mRNA-processing factor 6.
    
   0.979
N300_10417
Transcription elongation regulator 1-like.
    
   0.974
N300_11360
U2 small nuclear ribonucleoprotein B.
   
 0.970
Your Current Organism:
Calypte anna
NCBI taxonomy Id: 9244
Other names: C. anna
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.