N300_09439 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_09439

Nucleoporin p58/p45. (559 aa)

Predicted Functional Partners:

N300_15098

0.998

N300_15099

0.998

N300_02105

0.994

N300_15229

0.989

N300_11614

0.977

N300_04405

0.973

N300_07411

0.970

N300_11477

0.969

N300_06624

0.968

N300_02584

0.964

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_02105	N300_02584	A0A091I8F5	A0A091IMU7	Nuclear pore complex protein Nup54.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.992
N300_02105	N300_04405	A0A091I8F5	A0A091IEI9	Nuclear pore complex protein Nup54.	Protein SEC13; Belongs to the WD repeat SEC13 family.	0.983
N300_02105	N300_06624	A0A091I8F5	A0A091HR91	Nuclear pore complex protein Nup54.	Nuclear pore complex protein Nup205.	0.997
N300_02105	N300_07411	A0A091I8F5	A0A091ILP4	Nuclear pore complex protein Nup54.	Nuclear pore complex protein Nup155.	0.996
N300_02105	N300_09439	A0A091I8F5	A0A091HZI3	Nuclear pore complex protein Nup54.	Nucleoporin p58/p45.	0.994
N300_02105	N300_11477	A0A091I8F5	A0A091IGT7	Nuclear pore complex protein Nup54.	Nuclear pore complex protein Nup133.	0.990
N300_02105	N300_11614	A0A091I8F5	A0A091IK26	Nuclear pore complex protein Nup54.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.997
N300_02105	N300_15098	A0A091I8F5	A0A091I2R5	Nuclear pore complex protein Nup54.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.998
N300_02105	N300_15099	A0A091I8F5	A0A091I611	Nuclear pore complex protein Nup54.	E3 SUMO-protein ligase RanBP2.	0.998
N300_02105	N300_15229	A0A091I8F5	A0A091IFC2	Nuclear pore complex protein Nup54.	Nuclear pore glycoprotein p62.	0.998
N300_02584	N300_02105	A0A091IMU7	A0A091I8F5	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup54.	0.992
N300_02584	N300_04405	A0A091IMU7	A0A091IEI9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Protein SEC13; Belongs to the WD repeat SEC13 family.	0.998
N300_02584	N300_06624	A0A091IMU7	A0A091HR91	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup205.	0.995
N300_02584	N300_07411	A0A091IMU7	A0A091ILP4	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup155.	0.993
N300_02584	N300_09439	A0A091IMU7	A0A091HZI3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin p58/p45.	0.964
N300_02584	N300_11477	A0A091IMU7	A0A091IGT7	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133.	0.999
N300_02584	N300_11614	A0A091IMU7	A0A091IK26	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.995
N300_02584	N300_15098	A0A091IMU7	A0A091I2R5	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.999
N300_02584	N300_15099	A0A091IMU7	A0A091I611	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	E3 SUMO-protein ligase RanBP2.	0.999
N300_02584	N300_15229	A0A091IMU7	A0A091IFC2	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore glycoprotein p62.	0.972