STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N300_05425E3 ubiquitin-protein ligase makorin-1. (432 aa)    
Predicted Functional Partners:
N300_01918
E3 ubiquitin-protein ligase TRIP12.
     
 0.759
N300_14182
Lactamase_B domain-containing protein.
 
 
  
 0.753
N300_00568
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.721
N300_13232
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.710
N300_14181
Hydroxyacylglutathione hydrolase-like.
 
 
  
 0.700
N300_00945
Sorcin.
   
    0.674
N300_06258
Ubiquitin-40S ribosomal protein S27a.
    
  0.636
N300_03535
Polyubiquitin.
   
  0.633
N300_10229
Polyubiquitin-C.
   
  0.536
N300_10019
2'-5'-oligoadenylate synthase-like 2.
   
  0.536
Your Current Organism:
Calypte anna
NCBI taxonomy Id: 9244
Other names: C. anna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.