N300_10868 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_10868

Leucine-rich repeat and IQ domain-containing protein 1. (975 aa)

Predicted Functional Partners:

N300_10867

0.932

N300_02742

0.838

N300_00826

0.838

N300_14721

0.739

N300_03959

0.735

N300_10290

0.719

N300_11377

0.719

N300_13880

0.719

N300_10565

0.615

N300_01292

0.615

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00826	N300_02742	A0A091IFU1	A0A091HM19	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.452
N300_00826	N300_03959	A0A091IFU1	A0A091ICG7	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Peripheral plasma membrane protein CASK.	0.447
N300_00826	N300_10867	A0A091IFU1	A0A091IWY7	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and IQ domain-containing protein 1.	0.838
N300_00826	N300_10868	A0A091IFU1	A0A091I7C7	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and IQ domain-containing protein 1.	0.838
N300_01292	N300_03959	A0A091IFW5	A0A091ICG7	Glutamate receptor 4.	Peripheral plasma membrane protein CASK.	0.931
N300_01292	N300_10290	A0A091IFW5	A0A091HIY1	Glutamate receptor 4.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.776
N300_01292	N300_10565	A0A091IFW5	A0A091HMG6	Glutamate receptor 4.	Glutamate receptor 1.	0.931
N300_01292	N300_10867	A0A091IFW5	A0A091IWY7	Glutamate receptor 4.	Leucine-rich repeat and IQ domain-containing protein 1.	0.615
N300_01292	N300_10868	A0A091IFW5	A0A091I7C7	Glutamate receptor 4.	Leucine-rich repeat and IQ domain-containing protein 1.	0.615
N300_01292	N300_11377	A0A091IFW5	A0A091I6D7	Glutamate receptor 4.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.842
N300_01292	N300_13880	A0A091IFW5	A0A091IIP4	Glutamate receptor 4.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.776
N300_02742	N300_00826	A0A091HM19	A0A091IFU1	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.452
N300_02742	N300_03959	A0A091HM19	A0A091ICG7	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Peripheral plasma membrane protein CASK.	0.408
N300_02742	N300_10867	A0A091HM19	A0A091IWY7	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and IQ domain-containing protein 1.	0.838
N300_02742	N300_10868	A0A091HM19	A0A091I7C7	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and IQ domain-containing protein 1.	0.838
N300_03959	N300_00826	A0A091ICG7	A0A091IFU1	Peripheral plasma membrane protein CASK.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.447
N300_03959	N300_01292	A0A091ICG7	A0A091IFW5	Peripheral plasma membrane protein CASK.	Glutamate receptor 4.	0.931
N300_03959	N300_02742	A0A091ICG7	A0A091HM19	Peripheral plasma membrane protein CASK.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.408
N300_03959	N300_10290	A0A091ICG7	A0A091HIY1	Peripheral plasma membrane protein CASK.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.801
N300_03959	N300_10565	A0A091ICG7	A0A091HMG6	Peripheral plasma membrane protein CASK.	Glutamate receptor 1.	0.931