Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
N300_01755 | N300_05418 | A0A091IEH5 | A0A091I888 | Protein lin-54. | Reverse transcriptase domain-containing protein. | 0.600 |
N300_01755 | N300_05668 | A0A091IEH5 | A0A091HMN0 | Protein lin-54. | Protein lin-52. | 0.986 |
N300_01755 | N300_05717 | A0A091IEH5 | A0A091HN28 | Protein lin-54. | Histone-binding protein RBBP7. | 0.951 |
N300_01755 | N300_13458 | A0A091IEH5 | A0A091IE25 | Protein lin-54. | Protein lin-9. | 0.988 |
N300_03475 | N300_05418 | A0A091IQC3 | A0A091I888 | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | Reverse transcriptase domain-containing protein. | 0.659 |
N300_03475 | N300_10855 | A0A091IQC3 | A0A091I3U4 | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | Replication protein A 32 kDa subunit. | 0.998 |
N300_03475 | N300_13195 | A0A091IQC3 | A0A091HWY1 | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | Fanconi anemia group M protein. | 0.999 |
N300_05418 | N300_01755 | A0A091I888 | A0A091IEH5 | Reverse transcriptase domain-containing protein. | Protein lin-54. | 0.600 |
N300_05418 | N300_03475 | A0A091I888 | A0A091IQC3 | Reverse transcriptase domain-containing protein. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.659 |
N300_05418 | N300_05668 | A0A091I888 | A0A091HMN0 | Reverse transcriptase domain-containing protein. | Protein lin-52. | 0.607 |
N300_05418 | N300_05717 | A0A091I888 | A0A091HN28 | Reverse transcriptase domain-containing protein. | Histone-binding protein RBBP7. | 0.574 |
N300_05418 | N300_05998 | A0A091I888 | A0A091ILS8 | Reverse transcriptase domain-containing protein. | GDH/6PGL endoplasmic bifunctional protein. | 0.802 |
N300_05418 | N300_10855 | A0A091I888 | A0A091I3U4 | Reverse transcriptase domain-containing protein. | Replication protein A 32 kDa subunit. | 0.645 |
N300_05418 | N300_13195 | A0A091I888 | A0A091HWY1 | Reverse transcriptase domain-containing protein. | Fanconi anemia group M protein. | 0.957 |
N300_05418 | N300_13458 | A0A091I888 | A0A091IE25 | Reverse transcriptase domain-containing protein. | Protein lin-9. | 0.597 |
N300_05418 | N300_13668 | A0A091I888 | A0A091IQR2 | Reverse transcriptase domain-containing protein. | Centromere protein T. | 0.637 |
N300_05418 | N300_14183 | A0A091I888 | A0A091HI40 | Reverse transcriptase domain-containing protein. | Meiosis-specific with OB domain-containing protein. | 0.577 |
N300_05668 | N300_01755 | A0A091HMN0 | A0A091IEH5 | Protein lin-52. | Protein lin-54. | 0.986 |
N300_05668 | N300_05418 | A0A091HMN0 | A0A091I888 | Protein lin-52. | Reverse transcriptase domain-containing protein. | 0.607 |
N300_05668 | N300_05717 | A0A091HMN0 | A0A091HN28 | Protein lin-52. | Histone-binding protein RBBP7. | 0.926 |
page 1 of 3