STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N300_05707Zinc finger CCCH domain-containing protein 3. (322 aa)    
Predicted Functional Partners:
N300_14216
E3 ubiquitin-protein ligase RBBP6.
    
 0.938
N300_00568
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.938
N300_01909
Pre-mRNA 3' end processing protein WDR33.
   
 0.938
N300_05902
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.937
N300_15345
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.932
N300_12666
Symplekin.
    
 0.932
N300_06577
Cleavage stimulation factor subunit 3.
    
 0.929
N300_00600
Poly(A) polymerase alpha.
    
 0.928
N300_15752
Cleavage stimulation factor subunit 1.
   
 0.925
N300_11609
Cleavage and polyadenylation specificity factor subunit 5.
    
 0.922
Your Current Organism:
Calypte anna
NCBI taxonomy Id: 9244
Other names: C. anna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.