N300_13455 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_13455

Histone H3.3. (94 aa)

Predicted Functional Partners:

N300_10970

0.963

N300_04766

0.952

N300_03967

0.952

N300_13124

0.941

N300_13119

0.893

N300_02022

0.893

N300_13131

0.892

N300_13115

0.892

N300_13122

0.891

N300_01612

0.891

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01612	N300_02022	A0A091ICY8	A0A091I380	AT-rich interactive domain-containing protein 4A.	Histone H2B; Belongs to the histone H2B family.	0.721
N300_01612	N300_03967	A0A091ICY8	A0A091IBG1	AT-rich interactive domain-containing protein 4A.	Lysine-specific demethylase 6A.	0.715
N300_01612	N300_04766	A0A091ICY8	A0A091I7C3	AT-rich interactive domain-containing protein 4A.	Lysine-specific demethylase 6B.	0.702
N300_01612	N300_10970	A0A091ICY8	A0A091HJI2	AT-rich interactive domain-containing protein 4A.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.955
N300_01612	N300_13115	A0A091ICY8	A0A091I8D6	AT-rich interactive domain-containing protein 4A.	Histone H2B; Belongs to the histone H2B family.	0.721
N300_01612	N300_13119	A0A091ICY8	A0A091HLD2	AT-rich interactive domain-containing protein 4A.	Histone H2B; Belongs to the histone H2B family.	0.721
N300_01612	N300_13122	A0A091ICY8	A0A091HLP0	AT-rich interactive domain-containing protein 4A.	Histone H2B 1/2/3/4/6; Belongs to the histone H2B family.	0.721
N300_01612	N300_13124	A0A091ICY8	A0A091HLD7	AT-rich interactive domain-containing protein 4A.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.955
N300_01612	N300_13131	A0A091ICY8	A0A091HJJ1	AT-rich interactive domain-containing protein 4A.	Histone H2B 1/2/3/4/6; Belongs to the histone H2B family.	0.721
N300_01612	N300_13455	A0A091ICY8	A0A091ID35	AT-rich interactive domain-containing protein 4A.	Histone H3.3.	0.891
N300_02022	N300_01612	A0A091I380	A0A091ICY8	Histone H2B; Belongs to the histone H2B family.	AT-rich interactive domain-containing protein 4A.	0.721
N300_02022	N300_03967	A0A091I380	A0A091IBG1	Histone H2B; Belongs to the histone H2B family.	Lysine-specific demethylase 6A.	0.875
N300_02022	N300_04766	A0A091I380	A0A091I7C3	Histone H2B; Belongs to the histone H2B family.	Lysine-specific demethylase 6B.	0.875
N300_02022	N300_10970	A0A091I380	A0A091HJI2	Histone H2B; Belongs to the histone H2B family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.941
N300_02022	N300_13124	A0A091I380	A0A091HLD7	Histone H2B; Belongs to the histone H2B family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.907
N300_02022	N300_13455	A0A091I380	A0A091ID35	Histone H2B; Belongs to the histone H2B family.	Histone H3.3.	0.893
N300_03967	N300_01612	A0A091IBG1	A0A091ICY8	Lysine-specific demethylase 6A.	AT-rich interactive domain-containing protein 4A.	0.715
N300_03967	N300_02022	A0A091IBG1	A0A091I380	Lysine-specific demethylase 6A.	Histone H2B; Belongs to the histone H2B family.	0.875
N300_03967	N300_04766	A0A091IBG1	A0A091I7C3	Lysine-specific demethylase 6A.	Lysine-specific demethylase 6B.	0.847
N300_03967	N300_10970	A0A091IBG1	A0A091HJI2	Lysine-specific demethylase 6A.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.943