N300_08202 protein (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N300_08202

E3 ubiquitin-protein ligase CHFR. (632 aa)

Predicted Functional Partners:

KATNAL2

0.796

N300_14818

0.783

N300_14059

0.783

N300_08482

0.739

N300_07216

0.739

N300_08146

0.739

N300_06258

0.724

N300_13460

0.717

N300_07651

0.709

N300_11072

0.706

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	N300_06258	A0A091HSD3	A0A091HZ70	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ubiquitin-40S ribosomal protein S27a.	0.913
KATNAL2	N300_07216	A0A091HSD3	A0A091IFN6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.987
KATNAL2	N300_07651	A0A091HSD3	A0A091I8S2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UV excision repair protein RAD23 B.	0.915
KATNAL2	N300_08146	A0A091HSD3	A0A091J7J3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.987
KATNAL2	N300_08202	A0A091HSD3	A0A091IGN3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	E3 ubiquitin-protein ligase CHFR.	0.796
KATNAL2	N300_08482	A0A091HSD3	A0A091HPW9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.987
KATNAL2	N300_11072	A0A091HSD3	A0A091HRC0	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Protein sel-1 3.	0.620
KATNAL2	N300_14059	A0A091HSD3	A0A091J8L9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Spermatogenesis-associated protein 5.	0.520
KATNAL2	N300_14818	A0A091HSD3	A0A091HWY6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.548
N300_06258	KATNAL2	A0A091HZ70	A0A091HSD3	Ubiquitin-40S ribosomal protein S27a.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.913
N300_06258	N300_07216	A0A091HZ70	A0A091IFN6	Ubiquitin-40S ribosomal protein S27a.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.601
N300_06258	N300_07651	A0A091HZ70	A0A091I8S2	Ubiquitin-40S ribosomal protein S27a.	UV excision repair protein RAD23 B.	0.946
N300_06258	N300_08146	A0A091HZ70	A0A091J7J3	Ubiquitin-40S ribosomal protein S27a.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.601
N300_06258	N300_08202	A0A091HZ70	A0A091IGN3	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase CHFR.	0.724
N300_06258	N300_08482	A0A091HZ70	A0A091HPW9	Ubiquitin-40S ribosomal protein S27a.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.633
N300_06258	N300_13460	A0A091HZ70	A0A091IGA7	Ubiquitin-40S ribosomal protein S27a.	Poly [ADP-ribose] polymerase 1.	0.725
N300_06258	N300_14059	A0A091HZ70	A0A091J8L9	Ubiquitin-40S ribosomal protein S27a.	Spermatogenesis-associated protein 5.	0.874
N300_06258	N300_14818	A0A091HZ70	A0A091HWY6	Ubiquitin-40S ribosomal protein S27a.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.887
N300_07216	KATNAL2	A0A091IFN6	A0A091HSD3	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.987
N300_07216	N300_06258	A0A091IFN6	A0A091HZ70	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin-40S ribosomal protein S27a.	0.601