STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N300_04749HIV Tat-specific factor 1. (394 aa)    
Predicted Functional Partners:
N300_11669
Splicing factor 3A subunit 2.
   
 
 0.935
N300_08080
U2 small nuclear ribonucleoprotein A.
    
 
 0.911
N300_11670
Uncharacterized protein.
   
 
 0.871
N300_06667
Small nuclear ribonucleoprotein F.
   
   0.845
N300_13180
PHD finger-like domain-containing protein 5A.
    
 
 0.843
N300_10380
Pre-mRNA branch site protein p14.
    
 
 0.829
N300_10917
Splicing factor 3B subunit 4.
    
 
 0.817
N300_15596
Small nuclear ribonucleoprotein-associated protein B.
    
 
 0.808
N300_05877
Splicing factor 3A subunit 3.
    
 
 0.801
N300_09472
Small nuclear ribonucleoprotein G.
    
   0.781
Your Current Organism:
Calypte anna
NCBI taxonomy Id: 9244
Other names: C. anna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.