STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N300_12935DNA endonuclease RBBP8. (908 aa)    
Predicted Functional Partners:
N300_12370
BRCA1-associated RING domain protein 1.
    
 0.990
N300_01701
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
   
 0.981
N300_11017
DNA repair protein RAD50.
   
 0.975
N300_06977
Exonuclease 1.
   
 0.922
N300_05312
Ankyrin repeat domain-containing protein 12.
    
 0.896
N300_04350
Putative ankyrin repeat domain-containing protein 31.
    
 0.896
N300_03228
N-acetylserotonin O-methyltransferase-like.
    
 0.859
N300_14219
Partner and localizer of BRCA2.
  
 0.852
N300_07695
DNA replication ATP-dependent helicase/nuclease DNA2.
    
 0.831
N300_05213
Breast cancer type 2 susceptibility protein.
   
 0.826
Your Current Organism:
Calypte anna
NCBI taxonomy Id: 9244
Other names: C. anna
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