STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA68331.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (458 aa)    
Predicted Functional Partners:
SKA68336.1
PAS domain S-box-containing protein.
 
 0.983
SKA73571.1
Hpt domain-containing protein.
  
 0.940
SKA94299.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.930
SKA74065.1
Chemotaxis protein histidine kinase CheA.
  
 0.910
SKA68021.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.890
SKA68571.1
PAS domain S-box-containing protein.
 
 0.875
SKA76123.1
Hypothetical protein.
  
 0.870
SKA76129.1
Chemotaxis protein histidine kinase CheA.
  
0.870
SKA86206.1
Signal transduction histidine kinase.
 
 0.838
SKA68762.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 0.837
Your Current Organism:
Thiothrix eikelboomii
NCBI taxonomy Id: 92487
Other names: ATCC 49788, Eikelboom type 021N, T. eikelboomii, Thiothrix sp. AP3, filamentous bacterium COM-A, filamentous bacterium KR-A, filamentous bacterium T1-4, filamentous bacterium T2-1, strain AP3
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