Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA67388.1 | SKA70383.1 | SAMN02745130_00033 | SAMN02745130_00717 | 2,4-dienoyl-CoA reductase (NADPH2). | benzoyl-CoA oxygenase, component A. | 0.634 |
SKA67388.1 | SKA70558.1 | SAMN02745130_00033 | SAMN02745130_00767 | 2,4-dienoyl-CoA reductase (NADPH2). | Ferredoxin. | 0.999 |
SKA67388.1 | SKA85416.1 | SAMN02745130_00033 | SAMN02745130_02616 | 2,4-dienoyl-CoA reductase (NADPH2). | NADPH-dependent glutamate synthase beta chain. | 0.721 |
SKA67388.1 | SKA87292.1 | SAMN02745130_00033 | SAMN02745130_02822 | 2,4-dienoyl-CoA reductase (NADPH2). | Cytochrome P450. | 0.911 |
SKA67388.1 | pyrD | SAMN02745130_00033 | SAMN02745130_01350 | 2,4-dienoyl-CoA reductase (NADPH2). | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.754 |
SKA68530.1 | SKA70383.1 | SAMN02745130_00307 | SAMN02745130_00717 | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | benzoyl-CoA oxygenase, component A. | 0.580 |
SKA68530.1 | SKA70558.1 | SAMN02745130_00307 | SAMN02745130_00767 | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | Ferredoxin. | 0.950 |
SKA68530.1 | SKA85416.1 | SAMN02745130_00307 | SAMN02745130_02616 | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | NADPH-dependent glutamate synthase beta chain. | 0.460 |
SKA68530.1 | SKA87292.1 | SAMN02745130_00307 | SAMN02745130_02822 | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | Cytochrome P450. | 0.888 |
SKA70383.1 | SKA67388.1 | SAMN02745130_00717 | SAMN02745130_00033 | benzoyl-CoA oxygenase, component A. | 2,4-dienoyl-CoA reductase (NADPH2). | 0.634 |
SKA70383.1 | SKA68530.1 | SAMN02745130_00717 | SAMN02745130_00307 | benzoyl-CoA oxygenase, component A. | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | 0.580 |
SKA70383.1 | SKA70558.1 | SAMN02745130_00717 | SAMN02745130_00767 | benzoyl-CoA oxygenase, component A. | Ferredoxin. | 0.982 |
SKA70383.1 | SKA80887.1 | SAMN02745130_00717 | SAMN02745130_02132 | benzoyl-CoA oxygenase, component A. | Glutamate synthase (NADPH/NADH) small chain. | 0.608 |
SKA70383.1 | SKA85416.1 | SAMN02745130_00717 | SAMN02745130_02616 | benzoyl-CoA oxygenase, component A. | NADPH-dependent glutamate synthase beta chain. | 0.884 |
SKA70383.1 | SKA87292.1 | SAMN02745130_00717 | SAMN02745130_02822 | benzoyl-CoA oxygenase, component A. | Cytochrome P450. | 0.491 |
SKA70383.1 | SKA96260.1 | SAMN02745130_00717 | SAMN02745130_03863 | benzoyl-CoA oxygenase, component A. | Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.416 |
SKA70558.1 | SKA67388.1 | SAMN02745130_00767 | SAMN02745130_00033 | Ferredoxin. | 2,4-dienoyl-CoA reductase (NADPH2). | 0.999 |
SKA70558.1 | SKA68530.1 | SAMN02745130_00767 | SAMN02745130_00307 | Ferredoxin. | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | 0.950 |
SKA70558.1 | SKA70383.1 | SAMN02745130_00767 | SAMN02745130_00717 | Ferredoxin. | benzoyl-CoA oxygenase, component A. | 0.982 |
SKA70558.1 | SKA80887.1 | SAMN02745130_00767 | SAMN02745130_02132 | Ferredoxin. | Glutamate synthase (NADPH/NADH) small chain. | 0.999 |
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