STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA71487.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
SKA71484.1
Putative copper resistance protein D.
 
  
 0.933
SKA77287.1
Tat (twin-arginine translocation) pathway signal sequence.
    
   0.892
SKA84294.1
Sulfide dehydrogenase (flavocytochrome c), flavoprotein subunit.
    
   0.892
SKA93442.1
Reductase C-terminal.
    
   0.892
SKA94971.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
    
   0.892
SKA86124.1
Hypothetical protein.
  
    0.851
SKA71489.1
Copper resistance protein B precursor (CopB).
     
 0.748
SKA71492.1
Copper-resistance protein, CopA family.
     
 0.722
SKA71478.1
Uncharacterized conserved protein.
       0.597
SKA69658.1
Cytochrome c553.
    
   0.468
Your Current Organism:
Thiothrix eikelboomii
NCBI taxonomy Id: 92487
Other names: ATCC 49788, Eikelboom type 021N, T. eikelboomii, Thiothrix sp. AP3, filamentous bacterium COM-A, filamentous bacterium KR-A, filamentous bacterium T1-4, filamentous bacterium T2-1, strain AP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.