STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA95186.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
SKA83956.1
Hypothetical protein.
    
 0.982
SKA94521.1
Leucine rich repeat-containing protein.
   
 0.972
SKA87061.1
ATP-dependent helicase HrpA.
    
 0.969
SKA69395.1
Hypothetical protein.
    
 0.968
SKA76141.1
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.952
SKA76313.1
Protein of unknown function DUF29.
    
  0.952
SKA83526.1
Protein of unknown function DUF29.
    
  0.952
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
  0.942
rpsC
Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
  0.924
SKA92383.1
Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.918
Your Current Organism:
Thiothrix eikelboomii
NCBI taxonomy Id: 92487
Other names: ATCC 49788, Eikelboom type 021N, T. eikelboomii, Thiothrix sp. AP3, filamentous bacterium COM-A, filamentous bacterium KR-A, filamentous bacterium T1-4, filamentous bacterium T2-1, strain AP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.