STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA95558.1Protein of unknown function. (189 aa)    
Predicted Functional Partners:
SKA69433.1
PEP-utilising enzyme, mobile domain.
  
     0.613
SKA73220.1
Transglutaminase elicitor.
  
     0.610
SKA74523.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.602
SKA92686.1
Uncharacterized membrane protein YckC, RDD family.
  
     0.571
SKA79377.1
Peptidase family M50.
  
     0.536
SKA68680.1
Phosphatidylglycerol lysyltransferase.
  
     0.485
SKA95563.1
Protein of unknown function.
 
    
0.411
SKA83821.1
ProQ/FINO family protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
     0.401
SKA90436.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Thiothrix eikelboomii
NCBI taxonomy Id: 92487
Other names: ATCC 49788, Eikelboom type 021N, T. eikelboomii, Thiothrix sp. AP3, filamentous bacterium COM-A, filamentous bacterium KR-A, filamentous bacterium T1-4, filamentous bacterium T2-1, strain AP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.