STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA96059.1CRISPR-associated protein, Csy3 family. (337 aa)    
Predicted Functional Partners:
SKA96072.1
CRISPR-associated protein Csy1.
 
 
 
 0.998
SKA96055.1
CRISPR-associated endonuclease Csy4.
 
   
 0.960
SKA96066.1
CRISPR-associated protein, Csy2 family.
 
   
 0.956
SKA67931.1
Transposase.
   
   0.933
SKA97394.1
Transposase.
   
   0.933
SKA96085.1
CRISPR-associated endonuclease/helicase Cas3.
 
   
 0.873
cas1
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.817
SKA96074.1
Antitoxin Phd_YefM, type II toxin-antitoxin system; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.511
SKA96079.1
Hypothetical protein.
       0.511
SKA96083.1
PIN domain-containing protein.
       0.511
Your Current Organism:
Thiothrix eikelboomii
NCBI taxonomy Id: 92487
Other names: ATCC 49788, Eikelboom type 021N, T. eikelboomii, Thiothrix sp. AP3, filamentous bacterium COM-A, filamentous bacterium KR-A, filamentous bacterium T1-4, filamentous bacterium T2-1, strain AP3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.