F6YVD5_ORNAN protein (Ornithorhynchus anatinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6YVD5_ORNAN

RNA_pol_Rpb1_5 domain-containing protein. (492 aa)

Predicted Functional Partners:

POLR1B

0.984

POLR1C

0.968

F6Z410_ORNAN

0.945

F7CAP4_ORNAN

0.936

POLR1A

0.936

POLR2F

0.935

K7EDQ7_ORNAN

0.933

RRN3

0.931

POLR2C

0.931

POLR3B

0.926

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6YVD5_ORNAN	F6Z410_ORNAN	ENSOANP00000000410	ENSOANP00000015272	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.945
F6YVD5_ORNAN	F7CAP4_ORNAN	ENSOANP00000000410	ENSOANP00000013872	RNA_pol_Rpb1_5 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.936
F6YVD5_ORNAN	K7EDQ7_ORNAN	ENSOANP00000000410	ENSOANP00000031664	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.933
F6YVD5_ORNAN	POLR1A	ENSOANP00000000410	ENSOANP00000024766	RNA_pol_Rpb1_5 domain-containing protein.	Uncharacterized protein.	0.936
F6YVD5_ORNAN	POLR1B	ENSOANP00000000410	ENSOANP00000005744	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
F6YVD5_ORNAN	POLR1C	ENSOANP00000000410	ENSOANP00000004820	RNA_pol_Rpb1_5 domain-containing protein.	RNA polymerase I and III subunit C.	0.968
F6YVD5_ORNAN	POLR2C	ENSOANP00000000410	ENSOANP00000014851	RNA_pol_Rpb1_5 domain-containing protein.	RNA polymerase II subunit C.	0.931
F6YVD5_ORNAN	POLR2F	ENSOANP00000000410	ENSOANP00000023138	RNA_pol_Rpb1_5 domain-containing protein.	RNA polymerase II subunit F.	0.935
F6YVD5_ORNAN	POLR3B	ENSOANP00000000410	ENSOANP00000008795	RNA_pol_Rpb1_5 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.926
F6YVD5_ORNAN	RRN3	ENSOANP00000000410	ENSOANP00000000250	RNA_pol_Rpb1_5 domain-containing protein.	RRN3 homolog, RNA polymerase I transcription factor.	0.931
F6Z410_ORNAN	F6YVD5_ORNAN	ENSOANP00000015272	ENSOANP00000000410	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.945
F6Z410_ORNAN	F7CAP4_ORNAN	ENSOANP00000015272	ENSOANP00000013872	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.997
F6Z410_ORNAN	K7EDQ7_ORNAN	ENSOANP00000015272	ENSOANP00000031664	Uncharacterized protein.	Uncharacterized protein.	0.999
F6Z410_ORNAN	POLR1A	ENSOANP00000015272	ENSOANP00000024766	Uncharacterized protein.	Uncharacterized protein.	0.945
F6Z410_ORNAN	POLR1B	ENSOANP00000015272	ENSOANP00000005744	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
F6Z410_ORNAN	POLR1C	ENSOANP00000015272	ENSOANP00000004820	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.999
F6Z410_ORNAN	POLR2C	ENSOANP00000015272	ENSOANP00000014851	Uncharacterized protein.	RNA polymerase II subunit C.	0.974
F6Z410_ORNAN	POLR2F	ENSOANP00000015272	ENSOANP00000023138	Uncharacterized protein.	RNA polymerase II subunit F.	0.997
F6Z410_ORNAN	POLR3B	ENSOANP00000015272	ENSOANP00000008795	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.921
F6Z410_ORNAN	RRN3	ENSOANP00000015272	ENSOANP00000000250	Uncharacterized protein.	RRN3 homolog, RNA polymerase I transcription factor.	0.997