STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYSTLysosomal trafficking regulator. (3735 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
    
 
 0.614
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
  
 0.561
SQSTM1
Sequestosome 1.
   
 
 0.552
MMUT
Methylmalonyl-CoA mutase.
      
 0.524
STX11
Syntaxin 11; Belongs to the syntaxin family.
      
 0.518
HPS5
Uncharacterized protein.
   
  
 0.516
F6X1I6_ORNAN
SRP40_C domain-containing protein.
      
 0.503
GPX8
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.495
MPV17
Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.495
RAB27A
RAB27A, member RAS oncogene family.
      
 0.484
Your Current Organism:
Ornithorhynchus anatinus
NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.