WDR31 protein (Ornithorhynchus anatinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WDR31

WD_REPEATS_REGION domain-containing protein. (177 aa)

Predicted Functional Partners:

FAU

0.996

F7AR12_ORNAN

0.965

RPS20

0.964

RPLP0

0.959

RPS6

0.957

RPS23

0.956

F6TUI0_ORNAN

0.954

EEF1G

0.954

RPS3A

0.953

RPS16

0.953

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1G	F6TUI0_ORNAN	ENSOANP00000019710	ENSOANP00000010099	Uncharacterized protein; Belongs to the GST superfamily.	EF-1-gamma C-terminal domain-containing protein.	0.993
EEF1G	F7AR12_ORNAN	ENSOANP00000019710	ENSOANP00000003002	Uncharacterized protein; Belongs to the GST superfamily.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
EEF1G	FAU	ENSOANP00000019710	ENSOANP00000018319	Uncharacterized protein; Belongs to the GST superfamily.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.972
EEF1G	RPLP0	ENSOANP00000019710	ENSOANP00000010417	Uncharacterized protein; Belongs to the GST superfamily.	RL10P_insert domain-containing protein.	0.974
EEF1G	RPS16	ENSOANP00000019710	ENSOANP00000002430	Uncharacterized protein; Belongs to the GST superfamily.	Uncharacterized protein.	0.979
EEF1G	RPS20	ENSOANP00000019710	ENSOANP00000008744	Uncharacterized protein; Belongs to the GST superfamily.	Ribosomal protein S20.	0.979
EEF1G	RPS23	ENSOANP00000019710	ENSOANP00000020125	Uncharacterized protein; Belongs to the GST superfamily.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.853
EEF1G	RPS3A	ENSOANP00000019710	ENSOANP00000000371	Uncharacterized protein; Belongs to the GST superfamily.	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3.	0.966
EEF1G	RPS6	ENSOANP00000019710	ENSOANP00000005141	Uncharacterized protein; Belongs to the GST superfamily.	Ribosomal protein S6.	0.963
EEF1G	WDR31	ENSOANP00000019710	ENSOANP00000002215	Uncharacterized protein; Belongs to the GST superfamily.	WD_REPEATS_REGION domain-containing protein.	0.954
F6TUI0_ORNAN	EEF1G	ENSOANP00000010099	ENSOANP00000019710	EF-1-gamma C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.993
F6TUI0_ORNAN	F7AR12_ORNAN	ENSOANP00000010099	ENSOANP00000003002	EF-1-gamma C-terminal domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
F6TUI0_ORNAN	FAU	ENSOANP00000010099	ENSOANP00000018319	EF-1-gamma C-terminal domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.972
F6TUI0_ORNAN	RPLP0	ENSOANP00000010099	ENSOANP00000010417	EF-1-gamma C-terminal domain-containing protein.	RL10P_insert domain-containing protein.	0.974
F6TUI0_ORNAN	RPS16	ENSOANP00000010099	ENSOANP00000002430	EF-1-gamma C-terminal domain-containing protein.	Uncharacterized protein.	0.979
F6TUI0_ORNAN	RPS20	ENSOANP00000010099	ENSOANP00000008744	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein S20.	0.979
F6TUI0_ORNAN	RPS23	ENSOANP00000010099	ENSOANP00000020125	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.853
F6TUI0_ORNAN	RPS3A	ENSOANP00000010099	ENSOANP00000000371	EF-1-gamma C-terminal domain-containing protein.	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3.	0.966
F6TUI0_ORNAN	RPS6	ENSOANP00000010099	ENSOANP00000005141	EF-1-gamma C-terminal domain-containing protein.	Ribosomal protein S6.	0.963
F6TUI0_ORNAN	WDR31	ENSOANP00000010099	ENSOANP00000002215	EF-1-gamma C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.954