STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB1LIM domain binding 1. (375 aa)    
Predicted Functional Partners:
LMO2
LIM domain only 2.
    
 0.987
TAL1
BHLH domain-containing protein.
    
 0.985
GATA1
GATA-type domain-containing protein.
    
 0.891
LHX2
LIM homeobox 2.
    
 0.881
LMO4
LIM domain only 4.
   
 0.807
LMO1
LIM zinc-binding domain-containing protein.
    
 0.783
K7ECF9_ORNAN
LIM zinc-binding domain-containing protein.
    
 0.772
LMO3
LIM zinc-binding domain-containing protein.
    
 0.772
TCF3
BHLH domain-containing protein.
   
 0.771
TCF3-2
Uncharacterized protein.
   
 0.771
Your Current Organism:
Ornithorhynchus anatinus
NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.