STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD1Rhomboid domain containing 1. (318 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.874
TMEM214
Transmembrane protein 214.
      
 0.591
EIF4EBP1
Uncharacterized protein.
      
 0.574
TMEM38A
Transmembrane protein 38A.
      
 0.572
POPDC3
Popeye domain containing 3.
    
 
 0.571
SAE1
SUMO1 activating enzyme subunit 1.
      
 0.571
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
 
      0.553
SPATA5L1
AAA domain-containing protein.
    
 
 0.538
F6UFD3_ORNAN
ATPase_AAA_core domain-containing protein.
    
 
 0.538
F7G7P9_ORNAN
ATPase_AAA_core domain-containing protein; Belongs to the AAA ATPase family.
    
 
 0.538
Your Current Organism:
Ornithorhynchus anatinus
NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.