PHAX protein (Ornithorhynchus anatinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHAX

Phosphorylated adaptor for RNA export. (336 aa)

Predicted Functional Partners:

F7GEV5_ORNAN

0.953

K7E852_ORNAN

0.922

NCBP1

0.909

XPO1

0.737

PCF11

0.657

SSU72

0.585

UBE2J1

0.577

F6X1I6_ORNAN

0.575

NOB1

0.572

F7F2Y2_ORNAN

0.571

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6X1I6_ORNAN	PHAX	ENSOANP00000012469	ENSOANP00000019086	SRP40_C domain-containing protein.	Phosphorylated adaptor for RNA export.	0.575
F7F2Y2_ORNAN	PHAX	ENSOANP00000014111	ENSOANP00000019086	WD_REPEATS_REGION domain-containing protein.	Phosphorylated adaptor for RNA export.	0.571
F7GEV5_ORNAN	K7E852_ORNAN	ENSOANP00000017947	ENSOANP00000029709	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein.	0.986
F7GEV5_ORNAN	NCBP1	ENSOANP00000017947	ENSOANP00000003047	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap binding protein subunit 1.	0.998
F7GEV5_ORNAN	PCF11	ENSOANP00000017947	ENSOANP00000010456	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	PCF11 cleavage and polyadenylation factor subunit.	0.797
F7GEV5_ORNAN	PHAX	ENSOANP00000017947	ENSOANP00000019086	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Phosphorylated adaptor for RNA export.	0.953
F7GEV5_ORNAN	XPO1	ENSOANP00000017947	ENSOANP00000019649	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Exportin 1.	0.679
K7E852_ORNAN	F7GEV5_ORNAN	ENSOANP00000029709	ENSOANP00000017947	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.986
K7E852_ORNAN	NCBP1	ENSOANP00000029709	ENSOANP00000003047	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.988
K7E852_ORNAN	PCF11	ENSOANP00000029709	ENSOANP00000010456	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.691
K7E852_ORNAN	PHAX	ENSOANP00000029709	ENSOANP00000019086	Uncharacterized protein.	Phosphorylated adaptor for RNA export.	0.922
K7E852_ORNAN	SSU72	ENSOANP00000029709	ENSOANP00000012040	Uncharacterized protein.	Uncharacterized protein.	0.580
K7E852_ORNAN	XPO1	ENSOANP00000029709	ENSOANP00000019649	Uncharacterized protein.	Exportin 1.	0.550
NCBP1	F7GEV5_ORNAN	ENSOANP00000003047	ENSOANP00000017947	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.998
NCBP1	K7E852_ORNAN	ENSOANP00000003047	ENSOANP00000029709	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.988
NCBP1	PCF11	ENSOANP00000003047	ENSOANP00000010456	Nuclear cap binding protein subunit 1.	PCF11 cleavage and polyadenylation factor subunit.	0.847
NCBP1	PHAX	ENSOANP00000003047	ENSOANP00000019086	Nuclear cap binding protein subunit 1.	Phosphorylated adaptor for RNA export.	0.909
NCBP1	SSU72	ENSOANP00000003047	ENSOANP00000012040	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.595
NCBP1	XPO1	ENSOANP00000003047	ENSOANP00000019649	Nuclear cap binding protein subunit 1.	Exportin 1.	0.791
NOB1	PCF11	ENSOANP00000032556	ENSOANP00000010456	Uncharacterized protein.	PCF11 cleavage and polyadenylation factor subunit.	0.461